Datasets
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Loneliness, Anxiety Symptoms, Depressive Symptoms, and Suicidal Ideation in the All of Us Dataset
Katherine Musacchio Schafer; Jacob Franklin; Peter J. Embí; Colin G. Walsh (2026). Loneliness, anxiety symptoms, depressive symptoms, and suicidal ideation in the All of Us dataset. JAMA Network Open, 9(3), e260596. https://doi.org/10.1001/jamanetworkopen.2026.0596 This study examined how feelings of loneliness may help explain the link between anxiety, depression,… Read MoreMar. 26, 2026
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Microenvironment-aware spatial modeling for accurate inference of cell identity
Liu, Qi; Wang, Yu; Hsu, Chihyuan; Wanjalla, Celestine N.; Lau, Ken S.; & Shyr, Yu. (2026). Microenvironment-aware spatial modeling for accurate inference of cell identity. Nucleic Acids Research, 54(1). https://doi.org/10.1093/nar/gkaf1477 Spatial omics technologies make it possible to measure many molecular features in cells while also preserving information about… Read MoreJan. 28, 2026
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Biomedical data repositories require governance for artificial intelligence/machine learning applications at every step
Clayton, E. W., Rose, S., Nebecker, C., Novak, L., Bensoussan, Y. E., Chen, Y., Collins, B. X., Cordes, A., Evans, B. J., Ferryman, K. S., Hurst, S., Jiang, X., Lee, A. Y., McWeeney, S., Parker, J., Bélisle-Pipon, J.-C., Rosenthal, E. S., Yin, Z., Yracheta, J. M., & Malin,… Read MoreDec. 19, 2025 51
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Fine-grained multiclass nuclei segmentation with molecular empowered all-in-SAM model
Li, Xueyuan., Cui, Can., Deng, Ruining., Tang, Yucheng., Liu, Quan., Yao, Tianyuan., Bao, Shunxing., Chowdhury, Naweed Iffat., Yang, Haichun., & Huo, Yuankai. (2025 51). Fine-grained multiclass nuclei segmentation with molecular empowered all-in-SAM model. Journal of Medical Imaging, 12(5), 57501. https://doi.org/10.1117/1.JMI.12.5.057501 Recent advances in computational pathology—the use of computers to… Read MoreNov. 23, 2025 51
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Multimodal state-dependent connectivity analysis of arousal and autonomic centers in the brainstem and basal forebrain
Pourmotabbed, Haatef, Martin, Caroline G., Goodale, Sarah E., Doss, Derek J., Wang, Shiyu, Bayrak, Roza G., Kang, Hakmook, Morgan, Victoria L., Englot, Dario J., & Chang, Catie E. (2025 51). “Multimodal state-dependent connectivity analysis of arousal and autonomic centers in the brainstem and basal forebrain.” Imaging Neuroscience, 3,… Read MoreAug. 25, 2025 51
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Scalable quality control on processing of large diffusion-weighted and structural magnetic resonance imaging datasets
Kim, Michael E., Gao, Chenyu, Newlin, Nancy R., Rudravaram, Gaurav, Krishnan, Aravind R., Ramadass, Karthik, Kanakaraj, Praitayini, Schilling, Kurt G., Dewey, Blake E., & Bennett, David Alan. (2025 51). “Scalable quality control on processing of large diffusion-weighted and structural magnetic resonance imaging datasets.” PLOS ONE, 20(8), e0327388. Read MoreAug. 25, 2025 51
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Edge Classification on Graphs: New Directions in Topological Imbalance
Cheng, Xueqi; Wang, Yu; Liu, Yunchao; Zhao, Yuying; Aggarwal, Charu C.; Derr, Tyler. “Edge Classification on Graphs: New Directions in Topological Imbalance.” WSDM 2025 51 – Proceedings of the 18th ACM International Conference on Web Search and Data Mining (2025 51): 392-400. https://doi.org/10.1145/3701551.3703518. Read MoreApr. 23, 2025 51