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Li, Yang; Tan, Yuting; Chen, Rui; Zhou, Xin Maizie; Chen, You; Huo, Yuankai; Guo, Xingyi; Tiwari, Anshul; Wen, Zhexing; Zhong, Xue; Malin, Bradley A.; Li, Bingshan; Yin, Zhijun. (2026). ScCotag: Prior-informed co-optimal transport for robust single-cell multi-omics integration. Proceedings of the ACM SIGKDD International Conference on Knowledge Discovery and… Read More

Pan, Ying-Chun; Khan, Christopher M.; Berger, Matthew; Bryant, John M.; Lefevre, Ryan J.; Eagle, Susan S.; Byram, Brett C. (2026). Assessing and improving deep domain alignment in ultrasound via simulation diversity. Ultrasonics, 167, 108193. https://doi.org/10.1016/j.ultras.2026.108193 Deep learning has shown promise for improving ultrasound beamforming (the process of combining ultrasound… Read More

Tang, Yucheng.; He, Yufan.; Nath, Vishwesh.; Guo, Pengfeig.; Deng, Ruining.; Yao, Tianyuan.; Liu, Quan.; Cui, Can.; Yang, Yuechen.; Yin, Mengmeng.; Xu, Ziyue.; Roth, Holger.; Xu, Daguang.; Yang, Haichun.; Huo, Yuankai. (2026). HoloHisto: End-to-end Gigapixel WSI Segmentation with 4K Resolution Sequential Tokenization. IS and T International Symposium on Electronic Imaging… Read More

Chongyu Qu; Ritchie Zhao; Ye Yu; Bin Liu; Tianyuan Yao; Junchao Zhu; Bennett A. Landman; Yucheng Tang; Yuankai Huo (2026). MedPTQ: A practical pipeline for real post-training quantization in 3D medical image segmentation. Journal of Medical Imaging, 13(1), 014006. https://doi.org/10.1117/1.JMI.13.1.014006 This study focuses on making advanced deep… Read More

Zhang, Jinwei; Zuo, Lianrui; Dewey, Blake E.; Remedios, Samuel W.; Liu, Yihao; Hays, Savannah P.; Pham, Dzung L.; Mowry, Ellen M.; Newsome, Scott Douglas; Calabresi, Peter Arthur; Saidha, Shiv; Carass, Aaron; & Prince, Jerry L. (2026). UNISELF: A unified network with instance normalization and self-ensembled lesion fusion for… Read More

Krishnan, Aravind R., Li, Thomas Z., Remedios, Lucas W., Kim, Michael E., Gao, Chenyu., Rudravaram, Gaurav., McMaster, Elyssa M., Saunders, Adam M., Bao, Shunxing., Xu, Kaiwen., Zuo, Lianrui., Sandler, Kim Lori., Maldonado, Fabien., Huo, Yuankai., & Landman, Bennett Allan. (2025 51����). Multipath cycleGAN for harmonization of paired and unpaired… Read More

Guo, Junlin., Zimmer-Dauphinee, James R., Nieusma, Jordan M., Lu, Siqi., Liu, Quan., Deng, Ruining., Cui, Can., Yue, Jialin., Lin, Yizhe., Yao, Tianyuan., Xiong, Juming., Zhu, Junchao., Qu, Chongyu., Yang, Yuechen., Wilkes, Mitchell., Wang, Xiao., VanValkenburgh, Parker., Wernke, Steven A., & Huo, Yuankai. (2025 51����). DeepAndes: A Self-Supervised Vision Foundation… Read More

Bayrak, Roza G.; Hansen, Colin B.; Salas, Jorge Alberto; Ahmed, Nafis; Lyu, Ilwoo; Mather, Mara M.; Huo, Yuankai; Chang, Catie E. (2025 51����). DeepPhysioRecon: Tracing peripheral physiology in low frequency fMRI dynamics. Imaging Neuroscience, 3, IMAG.a.163. https://doi.org/10.1162/IMAG.a.163 Many brain studies that use functional magnetic resonance… Read More

Xiong, Juming, Deng, Ruining, Yue, Jialin, Lu, Siqi, Guo, Junlin, Lionts, Marilyn, Yao, Tianyuan, Cui, Can, Zhu, Junchao, & Qu, Chongyu. (2025 51����). ZeroReg3D: A zero-shot registration pipeline for 3D consecutive histopathology image reconstruction. Journal of Medical Imaging, 12(4), 44002. https://doi.org/10.1117/1.JMI.12.4.044002 Histological analysis, which examines… Read More

Lu, Zhengyi, Liang, Hao, Lu, Ming, Wang, Xiao, Yan, Xinqiang, & Huo, Yuankai. (2025 51����). “Fast-RF-Shimming: Accelerate RF shimming in 7T MRI using deep learning.” Meta-Radiology, 3(3), 100166. https://doi.org/10.1016/j.metrad.2025 51����.100166 Ultrahigh field (UHF) Magnetic Resonance Imaging (MRI) provides much stronger signals than standard MRI, allowing for… Read More