Deep Learning
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HoloHisto: End-to-end Gigapixel WSI Segmentation with 4K Resolution Sequential Tokenization
Tang, Yucheng.; He, Yufan.; Nath, Vishwesh.; Guo, Pengfeig.; Deng, Ruining.; Yao, Tianyuan.; Liu, Quan.; Cui, Can.; Yang, Yuechen.; Yin, Mengmeng.; Xu, Ziyue.; Roth, Holger.; Xu, Daguang.; Yang, Haichun.; Huo, Yuankai. (2026). HoloHisto: End-to-end Gigapixel WSI Segmentation with 4K Resolution Sequential Tokenization. IS and T International Symposium on Electronic Imaging… Read MoreMay. 26, 2026
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MedPTQ: a practical pipeline for real post-training quantization in 3D medical image segmentation
Chongyu Qu; Ritchie Zhao; Ye Yu; Bin Liu; Tianyuan Yao; Junchao Zhu; Bennett A. Landman; Yucheng Tang; Yuankai Huo (2026). MedPTQ: A practical pipeline for real post-training quantization in 3D medical image segmentation. Journal of Medical Imaging, 13(1), 014006. https://doi.org/10.1117/1.JMI.13.1.014006 This study focuses on making advanced deep… Read MoreMar. 26, 2026
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UNISELF: A unified network with instance normalization and self-ensembled lesion fusion for multiple sclerosis lesion segmentation
Zhang, Jinwei; Zuo, Lianrui; Dewey, Blake E.; Remedios, Samuel W.; Liu, Yihao; Hays, Savannah P.; Pham, Dzung L.; Mowry, Ellen M.; Newsome, Scott Douglas; Calabresi, Peter Arthur; Saidha, Shiv; Carass, Aaron; & Prince, Jerry L. (2026). UNISELF: A unified network with instance normalization and self-ensembled lesion fusion for… Read MoreFeb. 25, 2026
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Multipath cycleGAN for harmonization of paired and unpaired low-dose lung computed tomography reconstruction kernels
Krishnan, Aravind R., Li, Thomas Z., Remedios, Lucas W., Kim, Michael E., Gao, Chenyu., Rudravaram, Gaurav., McMaster, Elyssa M., Saunders, Adam M., Bao, Shunxing., Xu, Kaiwen., Zuo, Lianrui., Sandler, Kim Lori., Maldonado, Fabien., Huo, Yuankai., & Landman, Bennett Allan. (2025 51). Multipath cycleGAN for harmonization of paired and unpaired… Read MoreNov. 23, 2025 51
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DeepAndes: A Self-Supervised Vision Foundation Model for Multispectral Remote Sensing Imagery of the Andes
Guo, Junlin., Zimmer-Dauphinee, James R., Nieusma, Jordan M., Lu, Siqi., Liu, Quan., Deng, Ruining., Cui, Can., Yue, Jialin., Lin, Yizhe., Yao, Tianyuan., Xiong, Juming., Zhu, Junchao., Qu, Chongyu., Yang, Yuechen., Wilkes, Mitchell., Wang, Xiao., VanValkenburgh, Parker., Wernke, Steven A., & Huo, Yuankai. (2025 51). DeepAndes: A Self-Supervised Vision Foundation… Read MoreNov. 23, 2025 51
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DeepPhysioRecon: Tracing peripheral physiology in low frequency fMRI dynamics
Bayrak, Roza G.; Hansen, Colin B.; Salas, Jorge Alberto; Ahmed, Nafis; Lyu, Ilwoo; Mather, Mara M.; Huo, Yuankai; Chang, Catie E. (2025 51). DeepPhysioRecon: Tracing peripheral physiology in low frequency fMRI dynamics. Imaging Neuroscience, 3, IMAG.a.163. https://doi.org/10.1162/IMAG.a.163 Many brain studies that use functional magnetic resonance… Read MoreOct. 23, 2025 51
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ZeroReg3D: A zero-shot registration pipeline for 3D consecutive histopathology image reconstruction
Xiong, Juming, Deng, Ruining, Yue, Jialin, Lu, Siqi, Guo, Junlin, Lionts, Marilyn, Yao, Tianyuan, Cui, Can, Zhu, Junchao, & Qu, Chongyu. (2025 51). ZeroReg3D: A zero-shot registration pipeline for 3D consecutive histopathology image reconstruction. Journal of Medical Imaging, 12(4), 44002. https://doi.org/10.1117/1.JMI.12.4.044002 Histological analysis, which examines… Read MoreSep. 26, 2025 51
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Fast-RF-Shimming: Accelerate RF shimming in 7T MRI using deep learning
Lu, Zhengyi, Liang, Hao, Lu, Ming, Wang, Xiao, Yan, Xinqiang, & Huo, Yuankai. (2025 51). “Fast-RF-Shimming: Accelerate RF shimming in 7T MRI using deep learning.” Meta-Radiology, 3(3), 100166. https://doi.org/10.1016/j.metrad.2025 51.100166 Ultrahigh field (UHF) Magnetic Resonance Imaging (MRI) provides much stronger signals than standard MRI, allowing for… Read MoreAug. 20, 2025 51
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Tractography from T1-weighted MRI: Empirically exploring the clinical viability of streamline propagation without diffusion MRI
Cai, Leon Y., Lee, Ho Hin, Johnson, Graham W., Newlin, Nancy R., Ramadass, Karthik, Kim, Michael E., Archer, Derek B., Hohman, Timothy J., Jefferson, Angela L., Begnoche, J. Patrick, Boyd, Brian D., Taylor, Warren D., Morgan, Victoria L., Englot, Dario J., Nath, Vishwesh, Chotai, Silky, Barquero, Laura, D’Archangel,… Read MoreJul. 28, 2025 51
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Mapping Three-Dimensional Tumor Heterogeneity through Deep Learning Inference of Spatial Transcriptomics from Routine Histopathology: A Proof-of-Concept Comparative Study
Azher, Zarif L.; Srinivasan, Gokul; Yao, Keluo; Le, Minh-Khang; Lau, Ken S.; Kaur, Harsimran; Kolling, Fred; Vaickus, Louis; Lu, Xiaoying; Levy, Joshua J. “Mapping Three-Dimensional Tumor Heterogeneity through Deep Learning Inference of Spatial… Read MoreMar. 24, 2025 51